A Python library for structural bioinformatics, facilitating tasks from protein structure analysis to molecular dynamics preparations and analysis.
Biskit
- Python
- Biotechnik, Bioinformatik, Simulation
- Biotechnik, Biomaterialien, Computergestützte Strömungsmechanik (CFD), Design für additive Fertigung (DfAM), Robotik, Simulation, Benutzerzentriertes Design
Merkmale:
- PDB file manipulation, protein structure analysis, molecular modeling, normal mode analysis, interface to external programs (e.g., Xplor, CNS, Modeller, TINKER, Amber), workflow creation for MD simulations, protein-protein docking
Preisgestaltung:
- Kostenlos
- Object-oriented design, good for complex structural bioinformatics workflows, integrates with common external simulation tools, useful for automating MD setup and analysis.
- Smaller community compared to Biopython or MDAnalysis, documentation might be less extensive or updated for some advanced features, website/repository seems less actively maintained recently.
Am besten geeignet für:
- Structural bioinformaticians needing a platform for complex protein structure analysis, modeling workflows, and integrating with external molecular dynamics and modeling software.